SoA2USDM

Schedule of Activities tables from clinical trial protocols, as data that can be checked against the printed page.

A Schedule of Activities table is a 2D presentation of study logic, constrained by paper. SoA2USDM transcribes each table into five constructs and carries them through three schemas. Every element points back to its place on the page, and human judgement enters only through sidecars.

Watch

Two short videos, captions only.

The idea 40 s

One printed SoA page read as five constructs, one row followed through the three schemas, and one reviewer decision as a sidecar entry. On YouTube

On real protocols 75 s

A tour of the published views: the collection index, the review page, the consolidated schedule and the activity inventory. On YouTube

Read

The architecture on one page.

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From the printed table to schemas

The five constructs of an SoA table, what each becomes in the extraction, resolved and consolidated schemas, and how corrections work. USDM Instantiation is described as work in progress.

Explore real protocols

Every page below is generated from the extraction data and is public.

Collection index

The protocols of the usdm_data collection, with the views of each one.

A review page

NCT04184622: the extraction drawn on its source pages, with notes, checks and decisions.

A consolidated schedule

NCT04184622: two tables as one schedule, with the cross-table matches and their decisions.

Activity inventory

Search the activities of all protocols in the collection.

All collections

The entry page of the collections site.

Repositories

Code and data are kept apart.

soa2usdm

The schemas, the extraction prompt, the pipeline and the page generators. MIT licence.

github.com/kerfors/soa2usdm

soa2usdm-collections

The protocol collections: extraction, resolution and consolidation outputs, corrections sidecars and the generated pages.

github.com/kerfors/soa2usdm-collections

Status. Extraction, resolution and consolidation are in place for the published collections. Turning a consolidated SoA into a USDM v4 document is work in progress.