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2013
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July 2013
Kerstin Forsberg
@kerfors
Replying to
@AletaPool
@AletaPool
@gray_alasdair
@RebarInter Thanks for RT
Jul 30, 2013 · 10:52 AM
0
0
Kerstin Forsberg
@kerfors
First report from Semantic Trilogy
kerfors.blogspot.se/2013/07/semant…
with my
@Storify
from
#icbo2013
and from
#dils2013
Jul 30, 2013 · 10:50 AM
1
0
Kerstin Forsberg
@kerfors
Replying to
@robintheswede
Att-läsa: "Länkad data som ett alternativ för att publicera öppna offentliga data"
openthesis.org/documents/data…
@rocarls
#lankadedata
Jul 29, 2013 · 09:43 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@robintheswede
@rocarls
Tack. Ser framåt att läsa efter semestern
Jul 29, 2013 · 09:37 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@dWiseTech
.
@dWiseTech
Excellent to see RDF on the list for
#CDISC
SHARE. But it's much more than a format, see
semanticweb.com/working-on-tak…
Jul 29, 2013 · 09:33 PM
0
0
Kerstin Forsberg
@kerfors
New blog post: Semantic Trilogy Report (part 1)
kerfors.blogspot.se/2013/07/semant…
Jul 29, 2013 · 02:28 PM
2
1
Kerstin Forsberg
@kerfors
I'm very happy to see the OWL/RDF format of
#CDISC
Terminology at NCI EVS
cancer.gov/cancertopics/c…
building on
#CDISC2RDF
schema
Jul 27, 2013 · 04:17 PM
1
1
Kerstin Forsberg
@kerfors
Next Generation Cancer Data Discovery, Access, and Integration by
@jpmccu
slideshare.net/jpmccusker/dat…
#dils13
Jul 27, 2013 · 02:20 PM
0
0
Kerstin Forsberg
@kerfors
An OGMS-based Model for Clinical Information, interesting
#icbo13
presentation by Heiner Oberkampf, Siemens
slideshare.net/oberkampf/ogms…
Jul 27, 2013 · 02:16 PM
0
1
Kerstin Forsberg
@kerfors
#HL7
Watch: An OGMS-Based Model for Clinical Information from Siemens
hl7-watch.blogspot.se/2013/07/an-ogm…
#icb02013
Jul 27, 2013 · 02:04 PM
0
0
Kerstin Forsberg
@kerfors
@mjmrsc Hi, thx for RT and nice links in email. Checkout
youtu.be/C_75AS6zdKA
My red/white kayak from Canada
borealdesign.com
Jul 25, 2013 · 10:17 PM
0
0
Kerstin Forsberg
@kerfors
Nice summer so I'm kayaking & hiking instead of following up Semantic Trilogy
storify.com/kerfors/icbo20…
and
storify.com/kerfors/dils20…
Jul 25, 2013 · 09:45 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@omowizard
Pls use
#linkeddata
> Agreement between
@Regenstrief
&
@IHTSDO
: Linking LOINC & SNOMED CT
ihtsdo.org/fileadmin/user…
via
@omowizard
Jul 25, 2013 · 09:20 PM
1
1
Kerstin Forsberg
@kerfors
Replying to
@trished
+1 RT
@trished
: Love Coelho quote “Twitter is my bar. I sit at the counter and listen to the conversations..”
Jul 25, 2013 · 09:04 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@jpmccu
Good luck with your new job > RT
@jpmccu
: Getting Up Early in the Morning
wp.me/p1k5d-2q
Jul 25, 2013 · 08:53 PM
0
0
Kerstin Forsberg
@kerfors
"Most minimal ontology?"
geek-and-poke.com/geekandpoke/20…
HT @realpoirot
Jul 23, 2013 · 06:59 AM
7
4
Kerstin Forsberg
@kerfors
Replying to
@jindrichmynarz
#longread
> RT
@jindrichmynarz
: Capturing temporal dimension of
#linkeddata
: an extensive post on my blog
bit.ly/17kSMcq
Jul 22, 2013 · 05:35 PM
0
1
Kerstin Forsberg
@kerfors
Replying to
@bhaapgh
+1 MT
@bhaapgh
: prototype UX product labeling pharmacogenomics info
goo.gl/77BKq
(
goo.gl/988g6
)
#linkeddata
Jul 22, 2013 · 05:34 PM
1
0
Kerstin Forsberg
@kerfors
Replying to
@Chris_Evelo
+1 “The more twitter savvy a conference is the shorter the hashtag.” -
@Chris_Evelo
Jul 22, 2013 · 05:28 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@subatomicdoc
@subatomicdoc
Thx for mentioning. Will catch up on
#hlthtop
Jul 22, 2013 · 05:03 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@amrapaliz
@amrapaliz
Thx. Yes, quickly at Semantic Trilogy. Will look in more detail after the summer.
Jul 22, 2013 · 05:02 PM
0
1
Kerstin Forsberg
@kerfors
Time to leave Montreal and the Semantic Trilog and head home for 3 weeks vacation
#GoingKayaking
Jul 12, 2013 · 09:55 PM
0
0
Kerstin Forsberg
@kerfors
+1 “Crucially, unlike UML diagrams, OWL ontologies are machine-processable ... directly exploited by applications”
shrd.by/M6Bwon
Jul 12, 2013 · 09:42 PM
4
3
Kerstin Forsberg
@kerfors
Replying to
@jpmccu
@jpmccu
Good meeting F2F again. Good luck with your thesis, looking forward to read it, and with your new job. Have a nice summer.
Jul 12, 2013 · 09:36 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@dagmarwaltemath
@dagmarwaltemath
Kul att träffas. Ha en bra resa hem och låt oss hålla kontakten.
Jul 12, 2013 · 09:35 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@TrishWhetzel
@TrishWhetzel
Good meeting you F2F again. Good luck with your new job and have a nice summer.
Jul 12, 2013 · 09:34 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@micheldumontier
@micheldumontier
Thx an intensive semantic week. Good luck with your new job and have a nice summer.
Jul 12, 2013 · 09:33 PM
0
0
Kerstin Forsberg
@kerfors
A first raw list of tweets and links from the Conf. on Data Integration in the Life Sciences
#dils2013
storify.com/kerfors/dils20…
Jul 12, 2013 · 09:32 PM
0
1
Kerstin Forsberg
@kerfors
Replying to
@clssfr
MT @neohyppe: "Should data scientists take a hippocratic oath?" -
@alanruttenberg
#dils2013
panel
Jul 12, 2013 · 06:59 PM
0
0
Kerstin Forsberg
@kerfors
"Have data scientist assignwd to all funded grants to ensure data provenance and shareable data." -
@jpmccu
#dils2013
Jul 12, 2013 · 06:37 PM
2
2
Kerstin Forsberg
@kerfors
Replying to
@jahendler
@jahendler
nice ref from Olivier :)
Jul 12, 2013 · 06:24 PM
0
0
Kerstin Forsberg
@kerfors
"With
#SemanticWeb
you can very early find patterns of
#BadData
in your
#BigData
mess."
@egombocz
#dils2013
Jul 12, 2013 · 06:23 PM
2
2
Kerstin Forsberg
@kerfors
"The problem before
#SemanticWeb
was that you had to redo the integration time after time."
@paolociccarese
#dils2013
Jul 12, 2013 · 06:20 PM
0
1
Kerstin Forsberg
@kerfors
"Mappings are really hard, need more social agreements."
@paolociccarese
#dils2013
panel
Jul 12, 2013 · 06:16 PM
1
0
Kerstin Forsberg
@kerfors
Olivier Bodenreider (NLM)
#dils2013
"too much semantics kill semantics, just enough" ref. to
@jahendler
's
cs.rpi.edu/~hendler/Littl…
Jul 12, 2013 · 06:13 PM
3
1
Kerstin Forsberg
@kerfors
Olivier Bodenreider (NLM)
#dils2013
panel: key to normalise data and a robust set of mappings between ref. terminologies
Jul 12, 2013 · 06:09 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@dagmarwaltemath
Interesting use of
@neo4j
for model2graph described by
@dagmarwaltemath
at
#dils2013
bit.ly/11Ix3wx
Jul 12, 2013 · 02:30 PM
1
2
Kerstin Forsberg
@kerfors
Next up:
@dagmarwaltemath
describing the 'COmputational Modeling in BIology' NEtwork (COMBINE)
co.mbine.org
#dils2013
Jul 12, 2013 · 02:24 PM
0
1
Kerstin Forsberg
@kerfors
Replying to
@nimonika
@nimonika
thx :)
Jul 12, 2013 · 01:55 PM
0
0
Kerstin Forsberg
@kerfors
Pubmed LinkOut
#dils2013
ncbi.nlm.nih.gov/projects/linko…
Jul 12, 2013 · 01:54 PM
0
0
Kerstin Forsberg
@kerfors
The
@DomeoTool
for Open Annotation
annotationframework.org
#dils2013
Jul 12, 2013 · 01:49 PM
2
0
Kerstin Forsberg
@kerfors
Open Annotation Collaboration
openannotation.org
and Annotation Convergence workshop
darthcrimson.org/annotations/
Jul 12, 2013 · 01:12 PM
0
0
Kerstin Forsberg
@kerfors
Exciting
#dils2013
keynote today on Open Annotation by
@paolociccarese
Great follow-up to
@pascale_gaudet
invited talk yesterday
Jul 12, 2013 · 01:08 PM
1
0
Kerstin Forsberg
@kerfors
As a follow up to today's discussion at
#dils2013
: CDISC: Activities, Roadmaps and Strategy 2013-2015
cdiscportal.digitalinfuzion.com/CDISC%20User%2…
Jul 12, 2013 · 03:42 AM
0
1
Kerstin Forsberg
@kerfors
Replying to
@laurentlefort
@laurentlefort
Great! I hope to meet David Booth F2F here in Montreal tomorrow. David initiated the semtech ws:
youtu.be/Xn6RDLQNp2c
Jul 12, 2013 · 03:27 AM
0
1
Kerstin Forsberg
@kerfors
Replying to
@dagmarwaltemath
@dagmarwaltemath
checkout these two Norweigan researchers: Ole Hanseth
mn.uio.no/ifi/english/pe…
and Erik Monteiro
idi.ntnu.no/~ericm/ericm.p…
Jul 12, 2013 · 03:20 AM
0
0
Kerstin Forsberg
@kerfors
Good ending of day 6 at Semantic Trilogy. Thanks @mjmrsc for guiding us to great place for a beer after the reception and poster session.
Jul 12, 2013 · 03:08 AM
1
0
Kerstin Forsberg
@kerfors
My
#dils2013
poster
slideshare.net/kerfors/forsbe…
Thx
@jpmccu
@micheldumontier
@siv_arabandi
Jul 12, 2013 · 03:04 AM
0
1
Kerstin Forsberg
@kerfors
GO Annotations intro by
@pascale_gaudet
helped my understand
@jpmccu
's hackaton project
hackathon.io/semantic3
to turn them into
#Nanopubs
Jul 11, 2013 · 09:25 PM
0
0
Kerstin Forsberg
@kerfors
Invited
#dils2013
talk from
@pascale_gaudet
describing PAINT (Phylogenetic Annotation and INference Tool)
wiki.geneontology.org/index.php/PAINT
Jul 11, 2013 · 09:05 PM
0
1
Kerstin Forsberg
@kerfors
Nice
#dils2013
presentation of UCB Linked Data (UCBLD) system
cloud.generalbioinformatics.com/dils2013/
with some similarities with
@Open_PHACTS
Jul 11, 2013 · 07:57 PM
1
1
Kerstin Forsberg
@kerfors
Replying to
@kinsk1
@kinsk1
@DILS2013
@ICBO2013_
@micheldumontier
Great
#dils2013
#icbo2013
presentations!! Hope to see more of them published
Jul 11, 2013 · 04:36 PM
0
0
Kerstin Forsberg
@kerfors
Awesome work by
@jpmccu
@timrdf
et al
tw.rpi.edu/web/doc/mccusk…
Jul 11, 2013 · 04:23 PM
1
0
Kerstin Forsberg
@kerfors
Data Sharing and Management Snafu in 3 Short Acts
#dils2013
youtu.be/N2zK3sAtr-4
Jul 11, 2013 · 04:03 PM
3
0
Kerstin Forsberg
@kerfors
Next up
#dils2013
is
@jpmccu
"Next Generation Cancer Data Discovery, Access, & Integration Using Prizms &
#Nanopub
"
tw.rpi.edu/web/doc/mccusk…
Jul 11, 2013 · 03:57 PM
1
0
Kerstin Forsberg
@kerfors
Canadian health census to lod from @hc2lod
slideshare.net/bukharig8/cana…
#dils2013
Jul 11, 2013 · 03:52 PM
0
0
Kerstin Forsberg
@kerfors
Canadian Health Census to
#LinkedData
#OpenData
#LOD
shar.es/AIsNA
Presented at
#dils2013
Jul 11, 2013 · 03:48 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@dagmarwaltemath
@dagmarwaltemath
:-)
Jul 11, 2013 · 03:33 PM
0
0
Kerstin Forsberg
@kerfors
I'm looking forward to present my
#cdisc2rdf
poster at
#dils2013
in the afternoon
slideshare.net/kerfors/forsbe…
Jul 11, 2013 · 03:28 PM
1
1
Kerstin Forsberg
@kerfors
Nice - a
#dils2013
paper on the Swedish Transplantation Survival Prediction Program with a RDF Triplestore
unbsj.ca/sase/csas/data…
Jul 11, 2013 · 03:07 PM
0
0
Kerstin Forsberg
@kerfors
From
@alanruttenberg
#dils2013
on the Yosemite manifesto: "RDF is a *Framework*, not a Language" See also
semanticweb.com/working-on-tak…
Jul 11, 2013 · 02:25 PM
0
0
Kerstin Forsberg
@kerfors
@mjsuhonos
@alanruttenberg
Fair point - and Alan clarified that in is comment but I didn't capture it - will post again
Jul 11, 2013 · 02:22 PM
0
0
Kerstin Forsberg
@kerfors
Great!
@egombocz
at
#dils2013
: The Yosemite Manifesto on RDF as a Universal Healthcare Exchange Language
docs.google.com/forms/d/1qwfu-…
Jul 11, 2013 · 02:04 PM
2
0
Kerstin Forsberg
@kerfors
"RDF meets PCAST universal healthcare exchange language requirements"
@egombocz
#dils2013
Jul 11, 2013 · 02:02 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@kerfors
Pharma use case Drug Purity, Stability: "Cost-efficient, Fast, extensible: accomplished in 6 weeks (1 yr. projected)"
@egombocz
#dils2013
Jul 11, 2013 · 01:51 PM
0
0
Kerstin Forsberg
@kerfors
The joint
@US_FDA
@CDISC
@PHUSETwitta
Semantic Tecnology project
phusewiki.org/wiki/index.php…
mentioned by
@egombocz
#dils2013
Jul 11, 2013 · 01:40 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@rvanbruggen
@rvanbruggen
Nice to get to know that this done with neo4j i (I missed to follow up with you. Let's get in contact after the summer)
Jul 11, 2013 · 01:31 PM
0
0
Kerstin Forsberg
@kerfors
"Interoperability makes big data big open data"
@egombocz
#dils2013
Jul 11, 2013 · 01:23 PM
1
0
Kerstin Forsberg
@kerfors
"Moving to evidence-based, outcomes-focused, behavior-driven life sciences affects insurers payers providers pharmas"
@egombocz
#dils2013
Jul 11, 2013 · 01:22 PM
0
0
Kerstin Forsberg
@kerfors
Advances in Clinical Genome Sequencing and Diagnostics - Overview
insightpharmareports.com/reports_report…
Jul 11, 2013 · 01:17 PM
0
0
Kerstin Forsberg
@kerfors
Keynote speak by
@egombocz
kicking of
#dils2013
: Changing the Model in Pharma and Healthcare - Can We Afford to Wait Any Longer?
Jul 11, 2013 · 01:11 PM
0
0
Kerstin Forsberg
@kerfors
Day 6 of Semantic Trilogy. Now two days of Data Integration in Life Science
#dils2013
unbsj.ca/sase/csas/data…
Jul 11, 2013 · 01:10 PM
1
0
Kerstin Forsberg
@kerfors
Great start on day 6 of Semantic Trilogy: cappuccino and croissant at
@cafemyriade
w/ Wifi from
@Concordia
university
Jul 11, 2013 · 12:38 PM
0
0
Kerstin Forsberg
@kerfors
Is CDISC Controlled Terminology going the wrong way?
cdiscguru.blogspot.com/2013/07/is-cdi…
Jozef Aerts, XML4Pharma
#CDISC
Jul 11, 2013 · 02:14 AM
2
1
Kerstin Forsberg
@kerfors
Replying to
@mriben1
@mriben1
Thx - as I'm usually follow events on a distance I'm happy to be here. Watch out for my
#dils2013
tweets for 2 days :)
Jul 11, 2013 · 01:56 AM
0
0
Kerstin Forsberg
@kerfors
Discussion in the workshop for OGMS: "quick, ontological, fix" for SNOMED CT situations based on Costa & Schultz
unbsj.ca/sase/csas/data…
Jul 10, 2013 · 03:37 PM
0
1
Kerstin Forsberg
@kerfors
Replying to
@nimonika
MT
@nimonika
: Looking for pointers to upcoming conferences/workshops relating
#LinkedData
and
#Pharma
,
#semanticweb
#lod
#semweb
Jul 10, 2013 · 01:37 PM
0
0
Kerstin Forsberg
@kerfors
Best paper
#icbo13
: Ontology-based reinterpretation of the
#SNOMED
CT context model, Costa and Schulz
unbsj.ca/sase/csas/data…
Jul 10, 2013 · 01:14 PM
2
0
Kerstin Forsberg
@kerfors
Day 5 at Semantic Trilogy,
#icbo13
workshop OGMS (Ontology for General Medical Science)
ncorwiki.buffalo.edu/index.php/OGMS…
Jul 10, 2013 · 01:09 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@kerfors
#InfoAccountability
policy: "machine readable usages rules expressed in
#SemanticWeb
and
#LinkedData
"
@djweitzner
dig.csail.mit.edu/2013/07/pclob-…
Jul 10, 2013 · 04:01 AM
1
2
Kerstin Forsberg
@kerfors
Replying to
@djweitzner
#InfoAccountability
"policy whose restrictions are based on usage rules, not access or collection rules"
@djweitzner
dig.csail.mit.edu/2013/07/pclob-…
Jul 10, 2013 · 03:52 AM
0
0
Kerstin Forsberg
@kerfors
Replying to
@djweitzner
#InfoAccountability
"is the ability to pinpoint improper use of info as defined by legal rules"
@djweitzner
dig.csail.mit.edu/2013/07/pclob-…
Jul 10, 2013 · 03:51 AM
0
0
Kerstin Forsberg
@kerfors
Replying to
@isatools
@isatools
@TrishWhetzel
@ontowonka
@egombocz
@dagmarwaltemath
You've been quoted in my
#Storify
story "ICBO2013"
sfy.co/eMfG
Jul 10, 2013 · 02:17 AM
0
0
Kerstin Forsberg
@kerfors
Replying to
@bioontology
@bioontology
@mjmrsc
@ProfLHunter
@samuel_croset
@kerfors
You've been quoted in my
#Storify
story "ICBO2013"
sfy.co/eMfG
Jul 10, 2013 · 02:00 AM
0
0
Kerstin Forsberg
@kerfors
Links and tweets from all 3 days , Int Conf on Biomedical Ontology (ICBO 2013)
sfy.co/eMfG
#storify
#icbo13
#icbo2013
Jul 10, 2013 · 02:00 AM
1
1
Kerstin Forsberg
@kerfors
Ontology-based reinterpretation of the SNOMED CT context model
unbsj.ca/sase/csas/data…
<
#icbo13
paper of interest for
#EHR4CR
?
Jul 09, 2013 · 09:00 PM
0
1
Kerstin Forsberg
@kerfors
Great to talk F2F at
#icbo13
w/ Olivier Bodenreider (NLM) about RDF & URIs for
clinicaltrials.gov
see
lists.w3.org/Archives/Publi…
Jul 09, 2013 · 08:39 PM
0
1
Kerstin Forsberg
@kerfors
Replying to
@ontowonka
@ontowonka
interesting note about similar work for autism. Would be great if you could tweet about when it's published - thx
Jul 09, 2013 · 08:16 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@gray_alasdair
@gray_alasdair
congrats - looking forward reading
Jul 09, 2013 · 08:12 PM
0
0
Kerstin Forsberg
@kerfors
NeuroPsychological Testing Ontology
code.google.com/p/neuropsychol…
Jul 09, 2013 · 08:10 PM
1
0
Kerstin Forsberg
@kerfors
Interesting
#icbo13
talk on NeuroPsychological Testing Ontology
unbsj.ca/sase/csas/data…
< relevant for
#cdisc
#transcelerate
std dev
Jul 09, 2013 · 08:01 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@ontowonka
Please do >> RT
@ontowonka
:
#icbo13
I put my slides on slideshare at
slideshare.net/mhaendel
could other speakers do the same?
#icbo2013
Jul 09, 2013 · 07:01 PM
0
1
Kerstin Forsberg
@kerfors
Fascinating
#icbo13
talk, Udo Hahn: Linguistics of Ontologies < Looking forward to read the slides when published
unbsj.ca/sase/csas/data…
Jul 09, 2013 · 06:51 PM
0
1
Kerstin Forsberg
@kerfors
Replying to
@djweitzner
To read:
@djweitzner
's remark on
#InfoAccountability
for
#pclob
workshop on
#NSA
surveillance
dig.csail.mit.edu/2013/07/pclob-…
Jul 09, 2013 · 06:43 PM
0
1
Kerstin Forsberg
@kerfors
Nice exercise by Udo Hahn doing text analytics / entity extraction of an abstract w the audiance doing 'conceptual bridging' at
#icbo13
Jul 09, 2013 · 06:28 PM
0
1
Kerstin Forsberg
@kerfors
Udo Hahn: Diff. in performance of text analytics of abstract (90 %) to fulltext (1-2%), ref to Cohen et al
biomedcentral.com/1471-2105/11/4…
#icbo13
Jul 09, 2013 · 06:24 PM
0
1
Kerstin Forsberg
@kerfors
Udo Hahn on varities of life science texts: abridgde (eg abstract), compact (eg ontologies, drug labels), full texts
#icbo13
Jul 09, 2013 · 06:11 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@cdsouthan
@cdsouthan
will ask Bill
Jul 09, 2013 · 05:58 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@cdsouthan
@cdsouthan
Checkout Towards a Consistent & Sci. Accurate Drug Ontology
unbsj.ca/sase/csas/data…
Jul 09, 2013 · 03:56 PM
0
0
Kerstin Forsberg
@kerfors
Take home message: Drug Ontology (DrOM)
unbsj.ca/sase/csas/data…
#icbo13
Jul 09, 2013 · 03:52 PM
0
1
Kerstin Forsberg
@kerfors
Next presentation: Towards a Consistent and Scientifically Accurate Drug Ontology
unbsj.ca/sase/csas/data…
#icbo13
Jul 09, 2013 · 03:41 PM
0
1
Kerstin Forsberg
@kerfors
Replying to
@ICBO2013_
@ICBO2013_
Fyi: the URL to Snezana et al paper on ONSTR does not work, the others I used have been OK
unbsj.ca/sase/csas/data…
Jul 09, 2013 · 03:27 PM
0
0
Kerstin Forsberg
@kerfors
A new ‘network-extracted ontology’ model of the cell | KurzweilAI
kurzweilai.net/a-new-network-…
#icbo13
Jul 09, 2013 · 01:48 PM
2
0
Kerstin Forsberg
@kerfors
Nice to meet pharma colleagues from Sanofi and Novo Nordisk at the Int. Conf. on Biomedical Ontology
#icbo13
Jul 09, 2013 · 01:41 PM
0
0
Kerstin Forsberg
@kerfors
Very nice evening, sitting outside the hotel updating my
#ICBO13
#storify
sfy.co/eMfG
Jul 09, 2013 · 02:00 AM
0
1
Kerstin Forsberg
@kerfors
One more
#icbo13
poster Ontology for a specific disease. Idea: use as a basis for clinical data standards
Jul 09, 2013 · 01:09 AM
0
0
Kerstin Forsberg
@kerfors
#icbo13
poster: Disease Course for Multiple Sclerosis. Idea: use as basis for target product profile (TPP)
Jul 09, 2013 · 12:34 AM
0
1
Kerstin Forsberg
@kerfors
@PederSGbg Kolla in
unbsj.ca/sase/csas/data…
Jul 08, 2013 · 09:35 PM
0
0
Kerstin Forsberg
@kerfors
Cool
#icbo13
slide for
unbsj.ca/sase/csas/data…
See also TEDxStanford
youtube.com/watch?v=X1iKib…
Jul 08, 2013 · 09:27 PM
0
1
Kerstin Forsberg
@kerfors
Replying to
@johaneltes
@johaneltes
Not an answer, but checkout this work from
@alanruttenberg
et al Ontology for Oral Health and Disease
unbsj.ca/sase/csas/data…
Jul 08, 2013 · 09:09 PM
0
0
Kerstin Forsberg
@kerfors
FuXi (
#Python
) is a bi-directional logical reasoning system for the
#SemanticWeb
code.google.com/p/fuxi/wiki/Fu…
Jul 08, 2013 · 08:51 PM
0
2
Kerstin Forsberg
@kerfors
Nice to see how Siemens explore the use of OBO ontologies
unbsj.ca/sase/csas/data…
#icbo13
Jul 08, 2013 · 08:34 PM
0
1
Kerstin Forsberg
@kerfors
Replying to
@ProfLHunter
MT
@ProfLHunter
:
@ontowonka
"all NIH biosketches will be structured shortly"
rbm.nih.gov/profile_projec…
Applicable within corp. as well
#icbo13
Jul 08, 2013 · 07:49 PM
0
0
Kerstin Forsberg
@kerfors
Galaxy Zoo
galaxyzoo.org
Awasome example of crowdsourcing and citizen scientists mentioned at
#icbo13
applied for SNOMED-CT
Jul 08, 2013 · 07:11 PM
1
0
Kerstin Forsberg
@kerfors
One more cool tool "OntoMaton: a Bioportal powered ontology widget for Google Spreadsheets"
isatools.wordpress.com/2012/07/13/int…
Jul 08, 2013 · 07:01 PM
3
6
Kerstin Forsberg
@kerfors
Follow-up to the discussion on NCBO mappings yesterday:
bioontology.org/wiki/index.php…
Jul 08, 2013 · 06:46 PM
0
1
Kerstin Forsberg
@kerfors
Replying to
@egombocz
@egombocz
#icbo13
Jul 08, 2013 · 06:00 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@txkuhn
MT
@txkuhn
"allow for English sentences as assertions" Broadening the Scope of Nanopublications
tkuhn.ch/pub/kuhn2013es…
#nanopub
Jul 08, 2013 · 05:48 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@kerfors
Good question from
@ProfLHunter
about using the same modell also contextual events/problems with the vital sign device
Jul 08, 2013 · 04:02 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@kerfors
@ProfLHunter
@micheldumontier
I started use the 2013 alt. but mive to 13 when I saw you two authoraties :)
Jul 08, 2013 · 03:46 PM
0
0
Kerstin Forsberg
@kerfors
#icbo13
paper of ontology for contextualised vital signs of interest for
#quantifiedself
unbsj.ca/sase/csas/data…
Jul 08, 2013 · 03:45 PM
0
1
Kerstin Forsberg
@kerfors
Replying to
@ProfLHunter
@ProfLHunter
@micheldumontier
Pls. Decide :)
Jul 08, 2013 · 03:39 PM
0
0
Kerstin Forsberg
@kerfors
Interesting
#icbo13
paper on a Abormality Ontology and its use in Diisease Causal Chains
unbsj.ca/sase/csas/data…
Jul 08, 2013 · 03:37 PM
0
1
Kerstin Forsberg
@kerfors
Replying to
@ontowonka
@ontowonka
@ProfLHunter
@fgibson
Absolotely. (Can SKOS be a potential step) See the dialogue triggered from
twitter.com/kerfors/status…
Jul 08, 2013 · 03:14 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@ProfLHunter
@ProfLHunter
@ontowonka
@fgibson
Can we push back to
@LOINC
to publish a OWL (or SKOS) version
Jul 08, 2013 · 02:33 PM
0
0
Kerstin Forsberg
@kerfors
Ontologies for rats (esp BP): Measurement (CMO), Method (MMO), Experimental Condition (XCO)
#icbo13
sourceforge.net/projects/pheno…
Jul 08, 2013 · 02:04 PM
0
0
Kerstin Forsberg
@kerfors
Classification of ontologies in Yves Lussier's
#icbo13
keynote
Jul 08, 2013 · 01:36 PM
0
1
Kerstin Forsberg
@kerfors
The Network Medicine paper highlighted in the
#icbo2013
keynote
ncbi.nlm.nih.gov/pmc/articles/P…
(It's in my to-read-on-the-flight map :)
Jul 08, 2013 · 01:32 PM
1
0
Kerstin Forsberg
@kerfors
How can I have missed this
@CDISC
position paper from last year? Surveying and Navigating the CDE Landscape
cdisc.org/stuff/contentm…
Jul 08, 2013 · 02:13 AM
0
0
Kerstin Forsberg
@kerfors
Replying to
@dagmarwaltemath
@dagmarwaltemath
Hi, about 15 of us went to a French restaurant at 6pm from the conf. So, I'm back at the hotel now for an early night
Jul 08, 2013 · 01:13 AM
0
0
Kerstin Forsberg
@kerfors
My ICBO2013
#storify
with the first day of tutorials published
sfy.co/eMfG
#
#icbo2013
Jul 07, 2013 · 08:58 PM
0
0
Kerstin Forsberg
@kerfors
I like the approach Excel lists w. input to ontology dev. Tools mentioned
#icbo2013
tutorial
go.termgenie.org
ontorat.hegroup.org
Jul 07, 2013 · 08:49 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@TrishWhetzel
@TrishWhetzel
@jpmccu
:-) (not the first time I make that mistake)
Jul 07, 2013 · 08:29 PM
0
0
Kerstin Forsberg
@kerfors
"Ontology dev. should be more like software dev. and hence use test methods and version controls etc." James Overton
#icbo2013
Jul 07, 2013 · 08:15 PM
0
1
Kerstin Forsberg
@kerfors
Replying to
@TrishWhetzel
@TrishWhetzel
@jpmccu
Yes, I'm in the OBO 101. How about meet up over a bear afterwards?
Jul 07, 2013 · 07:53 PM
0
0
Kerstin Forsberg
@kerfors
Nice example of an ontology site: Ontologies in Oral Health and Disease
code.google.com/p/ohd-ontology/
maintained by
@alanruttenberg
#icbo2013
Jul 07, 2013 · 05:56 PM
0
2
Kerstin Forsberg
@kerfors
Replying to
@TrishWhetzel
@TrishWhetzel
Would be nice. Let's see if we can get
@jpmccu
to join us (talking about nanopubs as an structure for Bioportal mappings)
Jul 07, 2013 · 05:42 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@bioontology
@bioontology
In the Hackaton project yesterday we played around w/ datasets as nanopubs (GOA, iRef). Something for Bioportal mappings?
Jul 07, 2013 · 03:57 PM
0
1
Kerstin Forsberg
@kerfors
Replying to
@bioontology
@bioontology
quote from Melissa. Barry used the example of "chair". MeThinks: "Use with caution" (and be explicit about the provenance)
Jul 07, 2013 · 03:42 PM
0
0
Kerstin Forsberg
@kerfors
"Reasoning is a mechanism to leverage what you have said in OWL to do more for you."
@alanruttenberg
#icbo2013
tutorial
Jul 07, 2013 · 03:35 PM
0
1
Kerstin Forsberg
@kerfors
"If you see a URI in the user interface you should think: That's a lazy developer",
@alanruttenberg
in the
#icbo2013
tutrial
Jul 07, 2013 · 03:20 PM
2
2
Kerstin Forsberg
@kerfors
Anatomy of an OBO URI, Alan Ruttenberg in the
#icbo2013
tutorial
Jul 07, 2013 · 03:17 PM
2
1
Kerstin Forsberg
@kerfors
"The
#SemanticWeb
in a Nutshell", Alan Ruttenberg in the
#icbo2013
tutorial
Jul 07, 2013 · 03:10 PM
1
1
Kerstin Forsberg
@kerfors
Interesting
#icbo2013
paper: "An OGMS-based Model for Clinical Information (MCI)" from Siemens AG
unbsj.ca/sase/csas/data…
Jul 07, 2013 · 02:59 PM
0
1
Kerstin Forsberg
@kerfors
"Note to self: Do not use the mappings in the
bioportal.bioontology.org
" Melissa Heandel in the
#icbo2013
tutorial
Jul 07, 2013 · 02:52 PM
0
0
Kerstin Forsberg
@kerfors
"Use numeric URIs so that the meaning is truly the defintion and not the label." Melissa Heandel in the
#icbo2013
tutorial
Jul 07, 2013 · 02:49 PM
0
0
Kerstin Forsberg
@kerfors
Today's
#icbo2013
hackaton project on
#nanopubs
w/
@jpmccu
was great. Hope to see a CSV2Nanopubs (in RDF) as a result later on.
Jul 07, 2013 · 03:04 AM
1
0
Kerstin Forsberg
@kerfors
"La Triple" in the first evening of the Semantic Trilogy conf. w/ a lot of RDF triples :)
Jul 07, 2013 · 02:48 AM
0
1
Kerstin Forsberg
@kerfors
Replying to
@TrishWhetzel
@TrishWhetzel
Good idea. We plan to stop at 8pm and go to the Jazz festival :-)
Jul 06, 2013 · 10:31 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@TrishWhetzel
@TrishWhetzel
Pretty good
Jul 06, 2013 · 09:38 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@plannero
@plannero
Här använder vi faktiskt nanopubs för att publicera strukturerad data inte statements i artiklar.
Jul 06, 2013 · 09:02 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@plannero
+1 "Nanopublications
nanopub.org
is like Twitter for researchers"
@plannero
Jul 06, 2013 · 08:17 PM
2
2
Kerstin Forsberg
@kerfors
Replying to
@plannero
@plannero
Möjligheten till "repurposing of drugs" mha reasoning över biomedical data i form av nanopublications
nanopub.org
Jul 06, 2013 · 08:06 PM
0
0
Kerstin Forsberg
@kerfors
Using
@timrdf
's great CSV2RDF
github.com/timrdf/csv2rdf…
in the hackaton project
hackathon.io/semantic3
for "semantic drug repurposing"
Jul 06, 2013 · 07:56 PM
1
3
Kerstin Forsberg
@kerfors
Cool - Bookmarklet let’s you annotate any web page:
AnnotateIt.org
Jul 06, 2013 · 03:05 PM
0
1
Kerstin Forsberg
@kerfors
Replying to
@PharmaceuticBen
MT
@PharmaceuticBen
: Pharma to disclose doctor payments
ow.ly/mEDww
< .. to avoid this
propublica.org/nerds/item/hea…
Jul 04, 2013 · 08:22 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@PharmaceuticBen
MT
@PharmaceuticBen
: Pharma to disclose doctor payments
ow.ly/mEDww
< Preferable as
5stardata.info
..
Jul 04, 2013 · 08:21 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@svtdataj
+1 RT @svtpejl: Om
#öppendata
hos
#lantmäteriet
#smhi
#scb
#kolada
m fl. Varför är det så svårt att öppna upp?
blogg.svt.se/pejl/okategori…
Jul 04, 2013 · 07:59 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@bioontology
@bioontology
see you :)
Jul 04, 2013 · 07:45 PM
0
1
Kerstin Forsberg
@kerfors
#HL7
Watch: Ontology for General Medical Science vs. HL7 RIM
hl7-watch.blogspot.se/2013/07/the-on…
< Pre.read for
#ICBO2013
workshop on OGMS next week
Jul 03, 2013 · 08:10 PM
1
1
Kerstin Forsberg
@kerfors
Nice blog post by
@kurt_cagle
on
#BigData
and
#SemanticWeb
blogs.avalonconsult.com/blog/bpm/why-b…
h/t
@JamesKobielus
Jul 03, 2013 · 07:55 PM
0
2
Kerstin Forsberg
@kerfors
Replying to
@ericneumann
@ericneumann
Thanks for RT - Have a nice summer
Jul 03, 2013 · 07:50 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@semanticarts
Cool > RT
@semanticarts
: Want to learn more about
#SemanticTechnology
? Check out this awesome info site:
semantictechnology101.com
Jul 03, 2013 · 07:37 PM
2
2
Kerstin Forsberg
@kerfors
@egonwillighagen @PederSGbg Please do. My thinking was to bring this as a project for a hackaton this w/e
kerfors.blogspot.se/2013/06/semant…
Jul 03, 2013 · 01:37 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@moustaki
Reading
@moustaki
's excellent notes from
#lodlam
summit, Montreal
bbc.co.uk/rd/blog/2013/0…
#linkeddata
Jul 02, 2013 · 09:44 PM
0
2
Kerstin Forsberg
@kerfors
Replying to
@W3CSverige
MT
@W3CSverige
: Nytt dokument: länkad data ... Linked Data Glossary. Se
w3c.se/news-archive/2…
#lankadedata
Jul 02, 2013 · 09:21 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@gleonhard
MT
@gleonhard
: Everybody Loves Data Protection | TechNewsWorld
gerd.fm/17FplCF
audio interview with Oxford prof
@Viktor_MS
Jul 02, 2013 · 09:10 PM
0
0
Kerstin Forsberg
@kerfors
I've updated my blog post:on Semantic Trilogy
kerfors.blogspot.se/2013/06/semant…
with a link to my
#CDISC2RDF
poster for
#DILS2013
Jul 02, 2013 · 08:39 PM
1
0
Kerstin Forsberg
@kerfors
Replying to
@marie_wallace
+10 MT
@marie_wallace
: C’mon guys, let’s get serious about
#Privacy
!
ow.ly/mxYv7
Jul 01, 2013 · 09:57 PM
1
1
Kerstin Forsberg
@kerfors
Replying to
@marie_wallace
“Privacy doesn’t need a sledgehammer, it needs a scalpel.”
@marie_wallace
ow.ly/mxYv7
Jul 01, 2013 · 09:54 PM
0
0
Kerstin Forsberg
@kerfors
Nice: The Hitchhiker's Guide to Semantic Technologies
semantictechnology101.com
Hat tip to
@Jess1caRT
Jul 01, 2013 · 09:07 PM
4
4
Kerstin Forsberg
@kerfors
This is great: Who Needs Access
whoneedsaccess.org
via
@andrewsu
@MikeTaylor
Jul 01, 2013 · 08:28 PM
0
1
Kerstin Forsberg
@kerfors
Replying to
@andrewsu
@andrewsu
Hmm, my understanding is that all BFO based ontologies are Entity based, see
bioontology.ch/2012/11
Jul 01, 2013 · 09:23 AM
0
1
Kerstin Forsberg
@kerfors
List of relations
ontobee.org/browser/term.p…
from the new OBO Relationship
#Ontology
code.google.com/p/obo-relation…
Jul 01, 2013 · 08:16 AM
0
1
Kerstin Forsberg
@kerfors
Replying to
@andrewsu
@andrewsu
Checkout
code.google.com/p/obo-relation…
Jul 01, 2013 · 08:08 AM
0
0
Kerstin Forsberg
@kerfors
Replying to
@Dataversity
"A Semantics Approach to Information Management" from
@Dataversity
ow.ly/mp3No
#semanticweb
Jul 01, 2013 · 04:47 AM
0
0