@kerfors — December 2015

@cdsouthan Yes, I'm back in office 7th

Dec 29, 2015 · 11:08 PM 0 0

@cdsouthan @bengoldacre @opentrials @OKFN what can be done to make short term to make it a little bit better? Interrim lists of x-refs?

Dec 29, 2015 · 10:57 PM 0 0

@cdsouthan @bengoldacre @opentrials @OKFN Key person: Olivier Bodenreider behind both ct.gov, MeSH lhncbc.nlm.nih.gov/personnel/oliv…

Dec 29, 2015 · 10:46 PM 1 1

Replying to @bengoldacre

@bengoldacre @cdsouthan @opentrials @OKFN ct.gov, and trial sponsors (!), "from strings to things" lists.w3.org/Archives/Publi…

Dec 29, 2015 · 10:40 PM 1 1

.@cdsouthan OK, so if not "yet another aggregated database (YANAD)" i.e. @opentrials, what is the best we can do?? cc: @bengoldacre @OKFN

Dec 29, 2015 · 09:10 PM 1 0

"Metadata-on-use: emergent, contextual information that arises naturally when data is assessed and analyzed for use" conferences.oreilly.com/strata/big-dat…

Dec 26, 2015 · 10:49 AM 4 3

"Metadata can be used to develop a governance policy that is based on consensus and collective intelligence." oreilly.com/ideas/we-need-…

Dec 26, 2015 · 10:44 AM 0 2

#iswc2015 best applied paper @szeke et al: On #jsonld @elastic @schemaorg_dev videolectures.net/iswc2015_szeke… HT: @rdmpage

Dec 25, 2015 · 10:03 AM 0 2

"Predicting the Co-Evolution of Event and Knowledge Graphs" <- some interesting clinical research ideas outlined arxiv.org/pdf/1512.06900…

Dec 25, 2015 · 09:26 AM 1 2

@Dreyer Checkout @Google #KnowledgeGraph API developers.google.com/knowledge-grap…

Replying to @Dreyer

Dec 23, 2015 · 03:04 PM 0 0

What about #jsonld? See how @Google KnowledgeGraph API uses it developers.google.com/knowledge-grap… twitter.com/nordicapis/sta…

Dec 23, 2015 · 03:03 PM 1 1

Thx @520507 for sharing your notes from #ds101x #DataScience MOOC and for kind words about my blog twitter.com/520507/status/…

Dec 23, 2015 · 07:41 AM 1 0

Linked "Things" is really what Linked "Data" is about. URIs/IRIs can break silos cc: @rikardlinde @davewiner twitter.com/plannero/statu…

Dec 23, 2015 · 07:07 AM 1 4

Cool, OMOP (now @OHDSI) described in the 2nd week of @edXOnline @Columbia's MOOC: Statistical Thinking for #DataScience & Analytics #ds101x

Replying to @kerfors

Dec 21, 2015 · 08:53 PM 1 0

Replying to @StackOpenData

Dec 21, 2015 · 08:34 PM 0 2

Replying to @kerfors

Post-Doc in Informatics, Skövde AI Lab (SAIL), joint project with @AstraZenecaSE and @RecordedFuture his.se/en/about-us/Jo… Deadline 20 Jan

Dec 21, 2015 · 07:53 PM 0 0

Post-Doc in Informatics, forecasting of emergent technologies with a special focus on the biopharmaceutical domain his.se/en/about-us/Jo…

Dec 21, 2015 · 07:49 PM 1 0

The European Institute For Innovation Through Health Data. Inaugural Conference March 10 2016, Paris i-hd.eu

Dec 21, 2015 · 03:55 PM 0 0

#openEHR #CIMI #CDISC twitter.com/wolands_cat/st…

Dec 20, 2015 · 11:38 PM 0 1

Rya: cloud-based RDF triple store, built on top of @ApacheAccumulo, that supports SPARQL queries wiki.apache.org/incubator/RyaP… via @bobdc

Dec 20, 2015 · 10:50 PM 2 8

Finally, I've started to read TheBook: The Phoenix Project: A Novel about IT, DevOps, ... amazon.com/dp/0988262592/…

Dec 20, 2015 · 01:32 PM 0 0

Replying to @revisetrials

@RebarInter cool :)

Dec 17, 2015 · 05:26 PM 0 0

"We have recognised that huge value is lost by scientists taking their datasets to the grave with them." twitter.com/statsguyuk/sta…

Dec 16, 2015 · 11:27 PM 0 3

"what is not transparent is assumed to be wrong, corrupt, or biased until proved otherwise" twitter.com/statsguyuk/sta…

Dec 16, 2015 · 11:26 PM 0 1

In 2015: a photo of the members in the IT leadership team - all twelve between 40-50 years, all male ...

Dec 15, 2015 · 09:22 PM 0 0

Joining #ds101x today. Let's if I'll manage through this MOOC series. twitter.com/edxonline/stat…

Dec 15, 2015 · 05:16 PM 0 0

Semantic Technology 101 for Pharma, PhUSE CSS workshop with @NovasTaylor @MarcJAndersen phusewiki.org/docs/2015Webin… <- this looks awesome

Dec 14, 2015 · 09:28 PM 2 3

Great blog post! twitter.com/egonwillighage…

Dec 14, 2015 · 09:16 PM 0 1

Earlier this week I met two of my favorite researchers: @ontowonka and @CaroleAnneGoble See Carole's recent slides slideshare.net/carolegoble/cr…

Dec 11, 2015 · 07:02 AM 0 4

Interesting blog post HT @speakman twitter.com/us_fda/status/…

Dec 11, 2015 · 06:22 AM 0 1

Replying to @ontowonka

@ontowonka You've been quoted in my #Storify story "SWAT4LS2015" sfy.co/e0qRB

Dec 09, 2015 · 04:44 PM 0 0

Best #swat4ls paper: @wikidata: A platform for data integration and
dissemination for the life sciences and beyond swat4ls.org/wp-content/upl…

Dec 09, 2015 · 03:50 PM 6 9

@nqueralt Thx - added to my Storify

Replying to @nqueralt

Dec 09, 2015 · 02:46 PM 0 1

Nice demo @gray_alasdair of Validata w3.org/2015/03/ShExVa… Remember when this started in #swat4ls 2013 hackathon

Dec 09, 2015 · 02:35 PM 4 3

Agree. I wrote a blog about this 2 years ago kerfors.blogspot.nl/2013/11/de-ide… Recommend following @wilbanks #swat4ls twitter.com/hconstandt/sta…

Dec 09, 2015 · 02:22 PM 0 4

The Uberon integrated cross-species ontology uberon.github.io/Uberon highlighted by @ontowonka over dinner and now in her #swat4ls keynote

Dec 09, 2015 · 02:16 PM 1 2

@nqueralt Hi Nuria, I'm looking for the link to your nice tutorial.

Replying to @nqueralt

Dec 09, 2015 · 02:10 PM 0 1

Putting Data and Ontologies together using a @neo4j backed ontology store github.com/SciGraph/SciGr… --@ontowonka's #swat4ls keynote

Dec 09, 2015 · 01:51 PM 10 16

The presentation from @cochranecollab / @datalanguage PICO Annotator/Finder nicely relates to @bparsia's keynote twitter.com/jamesmalone/st…

Dec 09, 2015 · 11:37 AM 1 1

Plug by@hconstandt on #sawt4ls hackathon. Last year's hack has evolved into DISQOVER features. Hackathon tomorrow swat4ls.org/workshops/camb…

Dec 09, 2015 · 11:22 AM 0 2

I will look more into @eagleinetwork mentioned by @hconstandt in the #swat4ls industry stream

Dec 09, 2015 · 10:34 AM 1 3

Links to companies and tools presented this morning #SWAT4LS Industry stream kerfors.blogspot.se/2015/12/swat4l…

Dec 09, 2015 · 09:44 AM 0 4

Short blog post kerfors.blogspot.se/2015/12/swat4l… preparing for tomorrow's task to be the chair for the industry stream in #SWAT4LS

Dec 08, 2015 · 11:17 PM 0 2

Updated storify.com/kerfors/swat4l… with some of the highlights from the first #swat4ls conference day, Thx @CMWallberg for the nice picture.

Dec 08, 2015 · 11:15 PM 1 3

Nice #swat4ls demo by @simonjupp ebi.ac.uk/efo/webulous/ for collaborative ontology development using Google Docs twitter.com/egonwillighage…

Dec 08, 2015 · 04:52 PM 1 1

Lots of interesting technologies being used behind the nice APIs ebi.ac.uk/ols/beta/docs/… : BioSolr, Neo4j, HAL twitter.com/egonwillighage…

Dec 08, 2015 · 04:39 PM 0 2

Replying to @gray_alasdair

@gray_alasdair @bparsia pitty it was not recorded

Dec 08, 2015 · 04:32 PM 0 0

Great #swat4ls talk!! twitter.com/bparsia/status…

Dec 08, 2015 · 04:24 PM 0 0

Check out obopedia.org.uk #swat4ls twitter.com/egonwillighage…

Dec 08, 2015 · 04:21 PM 0 1

"Tawny-OWL is like R for ontologies" I think that is what @phillord just said. I will look at the #swat4ls tutorial github.com/phillord/tawny…

Dec 08, 2015 · 04:19 PM 1 2

Interesting lightweight use of git and Excel collaborative mapping effort with Roche on GO terms mentioned #swat4ls swat4ls.org/wp-content/upl…

Dec 08, 2015 · 03:50 PM 1 1

Nice @wikidata #swat4ls talk by Elvira Mitaka. "Edit this data" instead of "Edit this page"

Dec 08, 2015 · 02:56 PM 7 6

Bijan from @csmcr giving his #swat4ls keynote on representing all medical knowledge - Thinking About Details

Dec 08, 2015 · 02:11 PM 0 3

Replying to @jamesraymorris

@jamesraymorris hi @MatthieuJonglez, please get in toch - I'm the lady in a colourfull jacket in the audiance

Dec 08, 2015 · 01:32 PM 0 0

NanoText It sounds as another interesting #swat4ls poster. Useful for our internal annotations of clinical trials

Dec 08, 2015 · 12:06 PM 0 0

I'll checkout the @GraphScope #swat4ls poster - keyword search in the front of SPARQL sounds interesting

Dec 08, 2015 · 12:02 PM 1 0

Due to #ukacnetworkattack at #swat4ls and editing @Storify not working on my iPad I'll update storify.com/kerfors/swat4l… tonight

Dec 08, 2015 · 11:45 AM 0 0

Nice presentation w3id.org/vacseen next step on vaccine adverse events also sounds interesting #swat4ls twitter.com/nimonika/statu…

Dec 08, 2015 · 11:23 AM 2 1

And the BIM Biomedical Image Ontology sites.google.com/site/bimontolo… #swat4ls twitter.com/egonwillighage…

Dec 08, 2015 · 09:41 AM 0 1

ShEx (Shape Expressions) w3.org/2001/sw/wiki/S… I'm thinking of Swedish pronunciation for Cracker: Kex or käx ([kɛks] or [ɕɛks]) #swat4ls

Dec 07, 2015 · 04:21 PM 0 1

Replying to @jervenbolleman

@jervenbolleman Yepp, Great time listening to Harold - first time IRL for me :)

Dec 07, 2015 · 02:56 PM 0 0

"Facts about documents about the world, not the facts about the world" - Harold Solbrig about MESH #swat4ls tutorial

Dec 07, 2015 · 02:52 PM 0 4

Nice list of different types of Terminological Resources by Harold Solbrig w3.org/2015/Talks/120… #swat4ls tutorial

Dec 07, 2015 · 02:43 PM 4 2

Nice way to illustrate information model related to terminology model in #swat4ls tutorial w3.org/2015/Talks/120…

Dec 07, 2015 · 02:18 PM 4 3

Eric's slides in the #swat4ls tutorial on Semantic Representations of Clinical Care and Clinical Trial Data w3.org/2015/Talks/120…

Dec 07, 2015 · 02:10 PM 3 2

Thinking of if/how @opentrials and @wikidata could be help each other.

Dec 07, 2015 · 12:29 PM 0 2

Cool: @sebotic show us @wikidata's API JSON, data types, bots to do mass data imports etc. in the #swat4ls tutorial

Dec 07, 2015 · 12:23 PM 0 5

@egonwillighagen cool - thx

Dec 07, 2015 · 12:12 PM 0 0

I'm live blogging the coming three days using @Storify from the #swat4ls conference in Cambridge, UK kerfors.blogspot.se/2015/12/swat4l…

Dec 07, 2015 · 12:04 PM 0 1

Just arrived at #swat4ls in the @wikidata tutorial we re contributing on assigned tasks - very nice

Dec 07, 2015 · 11:35 AM 0 1

Rainy Sunday afternoon watching talks about @opentrials from @bengoldacre youtu.be/ngVYptGuK0E and @rufuspollock youtu.be/NWTrmFUchA4

Dec 06, 2015 · 06:39 PM 0 4

Thanks for Armando for the pointer to the BFO Ontologies book.mitpress.mit.edu/building-ontol… Finally I have ordered it twitter.com/nomini/status/…

Dec 05, 2015 · 03:08 PM 0 1

Replying to @LeeHarlandDr

@SciBitely Looking forward

Dec 05, 2015 · 02:31 PM 0 0

Building a repository of biomedical ontologies with @neo4j slideshare.net/thesimonjupp/b… I look forward to talk with @simonjupp at #swat4ls

Dec 05, 2015 · 02:28 PM 0 4

@egonwillighagen good point :)

Dec 05, 2015 · 02:17 PM 0 0

Replying to @CMWallberg

@CMWallberg Magnus, checkout my updated blog post for a couple kerfors.blogspot.se/2015/12/swat4l… - see you in Cambridge :)

Dec 05, 2015 · 02:12 PM 0 1

5 ⭐️ #OpenData #LinkedData 5stardata.info/en/ HT @echo4ngel @mhausenblas

Dec 05, 2015 · 01:40 PM 2 3

Very nice update of 5-star Open Data Kudos to @echo4ngel and to @mhausenblas for the first version #LinkedData 5stardata.info/en/

Dec 05, 2015 · 01:35 PM 0 3

On my to read list: New blog post by @swhume about @cdiscSHARE mungingmetadata.blogspot.se/2015/11/share-…

Dec 03, 2015 · 09:07 PM 0 2

Spend two evenings revisiting my blog posts kerfors.blogspot.se as my images got lost between Blogger-Picasa-Google photo.

Dec 03, 2015 · 08:59 PM 0 0

Updated my blog post in preparation for the #SWAT4LS conference next week kerfors.blogspot.se/2015/12/swat4l…

Dec 03, 2015 · 07:15 PM 0 1

Reading #swat4ls papers on the bus home. Impressed! Looking forward to next week swat4ls.org/workshops/camb…

Dec 03, 2015 · 05:13 PM 1 2

@langkilde @RecordedFuture kul :-)

Replying to @langkilde

Dec 03, 2015 · 03:04 PM 0 0

Looking forward to Barry Smith (BFO) presenting at the next PhUSE Semantic Technology meeting. twitter.com/nomini/status/…

Dec 01, 2015 · 09:46 PM 0 2

Long time since I blogged. And now I realize I have deleted all my images (Blogger - Picasa - Goggle Photos) on old posts :-( :-(

Dec 01, 2015 · 09:14 PM 0 0

Short blog post: #swat4ls in one week kerfors.blogspot.se/2015/12/swat4l…

Dec 01, 2015 · 09:09 PM 1 3

Less than a week to Semantic Web Applications and Tools for Life Sciences #swat4ls conference, Cambridge swat4ls.org/workshops/camb…

Dec 01, 2015 · 07:49 PM 3 5