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2017
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October 2017
Kerstin Forsberg
@kerfors
5 Ways
#Metadata
Is Critical For
#GDPR
Compliance
octopai.com/?p=2314
Oct 30, 2017 · 07:18 AM
2
2
Kerstin Forsberg
@kerfors
GDPR – An issue of hearts and minds, not cyber
eiuperspectives.economist.com/technology-inn…
"GDPR is about clarifying where PII is in any given organisation"
Oct 29, 2017 · 08:30 PM
1
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Kerstin Forsberg
@kerfors
Newest
#wikidata
Questions - Stack Overflow
stackoverflow.com/questions/tagg…
Oct 28, 2017 · 09:22 AM
0
1
Kerstin Forsberg
@kerfors
Replying to
@kerfors
"Conduct a holistic assessment: You first have to learn where the data is, what it is, and how to use it."
Oct 27, 2017 · 11:44 PM
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0
Kerstin Forsberg
@kerfors
"GSK Chief Data Officer (CDO) Mark Ramsey, who admits that GSK a laggard within a lagging industry in its approach to leveraging data."
twitter.com/cioonline/stat…
Oct 27, 2017 · 11:41 PM
0
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Kerstin Forsberg
@kerfors
Planning ahead: the impact of the GDPR on clinical trials in the EU
elexica.com/en/legal-topic…
Oct 27, 2017 · 11:28 PM
0
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Kerstin Forsberg
@kerfors
Privacy-preserving generative deep neural networks support clinical data sharing
biorxiv.org/content/early/…
Oct 23, 2017 · 07:59 PM
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Kerstin Forsberg
@kerfors
Looking forward to follow
#iswc2017
@iswc2017
gathering
#semanticweb
and
#linkeddata
experts
Oct 20, 2017 · 07:29 AM
3
2
Kerstin Forsberg
@kerfors
#PhUSE17
(most) papers and presentations now online
phuse.eu/annual-confere…
Oct 17, 2017 · 06:33 PM
1
1
Kerstin Forsberg
@kerfors
Replying to
@mlambrecht
@mlambrecht
Yes, post-sharing efforts required, for many things, incl keeping the SAS MSE
#screenonly
environment updated, see
twitter.com/kerfors/status…
Oct 17, 2017 · 06:16 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@MCRInformatics
@MCRInformatics
So
@sjn_16
, any ideas on who/where to study post-sharing resource implications similar to your earlier paper?
ncbi.nlm.nih.gov/pmc/articles/P…
Oct 17, 2017 · 01:24 PM
0
0
Kerstin Forsberg
@kerfors
Restarting the "Picking the Winners: Forecasting Emergent Technology" project, looking at nice
@Gephi
visualisations
his.se/en/Research/in…
Oct 16, 2017 · 08:43 AM
0
0
Kerstin Forsberg
@kerfors
Replying to
@mlambrecht
@mlambrecht
Providing reference data/standards such as MedDRA versions.
Oct 15, 2017 · 12:51 PM
0
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Kerstin Forsberg
@kerfors
Replying to
@mlambrecht
@mlambrecht
Installing new R packages. Also providing Python, its packages, as this it is becoming more popular also by clinical data scientists.
Oct 15, 2017 · 12:47 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@mlambrecht
@mlambrecht
How can "qualified researchers" best work with shared data? See
@wilbanks
' First, design for data sharing
ncbi.nlm.nih.gov/m/pubmed/26939…
Oct 12, 2017 · 09:07 PM
0
0
Kerstin Forsberg
@kerfors
Replying to
@mlambrecht
@mlambrecht
Yes, new sign-on looks good. However, having required sw pkgs & related data available takes time/efforts. More a mindset than a tool issue.
Oct 12, 2017 · 08:58 PM
0
0
Kerstin Forsberg
@kerfors
Bookmarked: "The role of pragmatism in explaining heterogeneity in meta-analyses of randomised trials: a protocol …
ift.tt/2hE1lvj
Oct 12, 2017 · 08:23 PM
0
0
Kerstin Forsberg
@kerfors
Advances in Studying Brain Morphology: The Benefits of Open-Access Data
frontiersin.org/article/10.338…
Oct 12, 2017 · 07:49 PM
0
0
Kerstin Forsberg
@kerfors
Great week! Met F2F:
@WayneKubick
@nomini
@NovasTaylor @Assero_UK
@darth_jozza
Listened to: Harold Solbrig Seen photo of Norman Stockbridge
Oct 12, 2017 · 07:15 PM
1
2
Kerstin Forsberg
@kerfors
I have just join the
#FHIR
and RDF webinar. Slides:
github.com/BD2KOnFHIR/BLE…
files:
github.com/BD2KOnFHIR/BLE…
twitter.com/kerfors/status…
Oct 12, 2017 · 06:04 PM
1
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Kerstin Forsberg
@kerfors
#phuse17
My goal for
#phuse18
: abstract on AZ ClinicalTrials and Clinical Study URI, a step to Linked Clinical Data. Now time to head home.
Oct 11, 2017 · 01:29 PM
0
0
Kerstin Forsberg
@kerfors
#phuse17
For INDs: must submit data in the data formats listed in the FDA Data Standards Catalog for studies that start after Dec. 17, 2017
Oct 11, 2017 · 01:09 PM
0
2
Kerstin Forsberg
@kerfors
Replying to
@namedgraph
@namedgraph
@GraknLabs
@jakkozak
Yepp, but nice for new combers to graphs, triples to start exploring to get the idea. And then as a next step into RDF, SPARQL, SHACL etc.
Oct 11, 2017 · 12:59 PM
0
0
Kerstin Forsberg
@kerfors
Thanks
@darth_jozza
for the
#phuse17
reference to our
#LinkedData
presentation at
@CDISC
back in 2012
kerfors.blogspot.co.uk/2012/05/semant…
Oct 11, 2017 · 11:24 AM
0
1
Kerstin Forsberg
@kerfors
50+ people in the
#LinkedData
workshop at
#phuse17
Many thanks @NovasTaylor and
@darth_jozza
Oct 11, 2017 · 11:18 AM
0
1
Kerstin Forsberg
@kerfors
Will be busy in the
#LinkedData
#phuse17
workshop
phuse.eu/hands-on-works…
So less tweets today, meanwhile checkout
storify.com/kerfors/phuse-…
Oct 11, 2017 · 09:40 AM
0
1
Kerstin Forsberg
@kerfors
Third time in two days some smart people have been pointing me to
@GraknLabs
Oct 10, 2017 · 09:31 PM
2
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Kerstin Forsberg
@kerfors
Looking forward to tomorrow's
#phuse17
Hands-on Workshop Introduction to Linked Data and Graph Databases
phuse.eu/hands-on-works…
Oct 10, 2017 · 04:52 PM
1
1
Kerstin Forsberg
@kerfors
Blog post with more background to Armando's
#phuse17
presentation
twitter.com/nomini/status/…
Oct 10, 2017 · 04:47 PM
0
1
Kerstin Forsberg
@kerfors
Just learned about the
@wikidata
Query Helper
wikidata.org/wiki/Wikidata:…
Very nice!
Oct 10, 2017 · 03:39 PM
2
2
Kerstin Forsberg
@kerfors
Interesting paper/nice blog post. Would be good with a look at the time/costs for resources to answer questions etc. once data is shared
twitter.com/sjn_16/status/…
Oct 10, 2017 · 03:18 PM
1
1
Kerstin Forsberg
@kerfors
Bookmarked: "Exploring changes over time and characteristics associated with data retrieval across individual part…
ift.tt/2kE66tu
Oct 10, 2017 · 02:34 PM
0
1
Kerstin Forsberg
@kerfors
Bookmarked: "Ethics approval in applications for open-access clinical trial data: An analysis of researcher statem…
ift.tt/2xw5JY4
Oct 10, 2017 · 02:34 PM
0
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Kerstin Forsberg
@kerfors
Challenges to complete and useful data sharing
ncbi.nlm.nih.gov/pmc/articles/P…
Oct 10, 2017 · 12:51 PM
0
1
Kerstin Forsberg
@kerfors
The critique of the "remote desktop" in SAS Multisponsor Environment (MSE) to share data in
clinicalstudydatarequest.com
mentioned at
#phuse17
Oct 10, 2017 · 11:28 AM
0
0
Kerstin Forsberg
@kerfors
Yet another interesting combination mentioned by
@WayneKubick
FHIR resources + detailed CIMI models
hl7.org/Special/Commit…
#phuse17
Oct 10, 2017 · 09:13 AM
0
2
Kerstin Forsberg
@kerfors
One of the apps in SMART on FHIR application mentioned by
@WayneKubick
#phuse17
apps.smarthealthit.org/app/growth-cha…
Oct 10, 2017 · 09:08 AM
0
1
Kerstin Forsberg
@kerfors
HL7 Fast Healthcare Interoperability Resources (FHIR) at
#phuse17
@WayneKubick
pinpoints the emerging use of RDF
w3c.github.io/hcls-fhir-rdf/…
Oct 10, 2017 · 09:03 AM
6
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Kerstin Forsberg
@kerfors
Time for
@WayneKubick
's
#phuse17
keynote. Recommended reading from Wayne:
gregmckeown.com/book/
Oct 10, 2017 · 08:19 AM
2
1
Kerstin Forsberg
@kerfors
Talking observation ontology w/
@nomini
at
#phuse17
reminded me of CRL (Clinical Refrence Libarary)
slideshare.net/kerfors/design…
Oct 09, 2017 · 05:28 PM
0
1
Kerstin Forsberg
@kerfors
Replying to
@GuyGarrett
@GuyGarrett
FYI
twitter.com/kerfors/status…
Oct 09, 2017 · 05:05 PM
0
0
Kerstin Forsberg
@kerfors
Two W3C specifications of interest for clinical data:
#SHACL
and
#SHEX
to define "shapes" to validate data
morganclaypoolpublishers.com/catalog_Orig/p…
#phuse17
Oct 09, 2017 · 04:17 PM
1
4
Kerstin Forsberg
@kerfors
More about Johannes
#Phuse17
presentation
s-cubed-global.com/news-and-artic…
twitter.com/kerfors/status…
Oct 09, 2017 · 04:11 PM
2
1
Kerstin Forsberg
@kerfors
Interesting
#phuse17
paper: Topology-based Clinical Data Mining: Identifying Hidden Patterns in Clinical Data Sets
pharmasug.org/proceedings/20…
Oct 09, 2017 · 04:09 PM
0
1
Kerstin Forsberg
@kerfors
Wonderful when Johannes shows how a SAS datasets looks like when you open it in a browser. And say - this is data :-)
twitter.com/KirstenLangend…
Oct 09, 2017 · 03:40 PM
0
2
Kerstin Forsberg
@kerfors
Yet another
#LinkedData
and
#Graph
database at
#phuse17
This time my previous collegue, Johaness Ulander, now at
@scubedglobal
Oct 09, 2017 · 03:38 PM
1
1
Kerstin Forsberg
@kerfors
Clinical Trials Data as RDF
github.com/phuse-org/CTDa…
where we find @NovasTaylor and
@nomini
's
#phuse17
paper
github.com/phuse-org/CTDa…
Oct 09, 2017 · 01:54 PM
1
1
Kerstin Forsberg
@kerfors
Really enoying @NovasTaylor
#LinkedData
talk at
#phuse17
"Linked data is a lot like LEGO"
Oct 09, 2017 · 01:36 PM
1
2
Kerstin Forsberg
@kerfors
Interesting.
@OHDSI
Achilles was also mentioned at
#Phuse17
. Many would say BRIDG is CMOP. I do not agree.
twitter.com/danhousman/sta…
Oct 09, 2017 · 01:15 PM
1
0
Kerstin Forsberg
@kerfors
#phuse17
"Applying the OMOP Common Data Model to Dutch Healthcare Data: A Case Study" mentioned
@OHDSI
tools e.g
ohdsi.org/analytic-tools…
Oct 09, 2017 · 01:10 PM
2
3
Kerstin Forsberg
@kerfors
Live blogging from
#PhUSE17
conference 9-11 October in Edinburgh. Checkout my Storify:
storify.com/kerfors/phuse-…
Oct 09, 2017 · 12:43 PM
0
1
Kerstin Forsberg
@kerfors
SyntheticMass and Synthea mentioned at the
#phuse17
in a nice presentation "Use of
#FHIR
in the Generation of Real-world Evidence"
twitter.com/HL7/status/855…
Oct 09, 2017 · 12:40 PM
0
2
Kerstin Forsberg
@kerfors
The concept of interactive TLFs (iTLF) was mentioned by the presenters. Also the question of mappings needed came up.
twitter.com/kerfors/status…
Oct 09, 2017 · 11:28 AM
0
2
Kerstin Forsberg
@kerfors
3(3)
@AstraZeneca
at
#phuse17
"Converting Legacy Data to "ADaM-like" Data for Making Efficient Regulatory Response"
Oct 09, 2017 · 11:12 AM
0
0
Kerstin Forsberg
@kerfors
2(4)
@AstraZeneca
at
#phuse17
"Harmonizing SDTM at the Source: Designing Collection Instruments that Support Sponsor Standards"
Oct 09, 2017 · 11:11 AM
0
1
Kerstin Forsberg
@kerfors
1(4)
@AstraZeneca
at
#phuse17
"REACTing to Data: The Use of
Data Visualisation within Early Clinical Statistical Programming at AstraZeneca"
Oct 09, 2017 · 11:10 AM
0
0
Kerstin Forsberg
@kerfors
Good to see more ontology initiatives mentioned at
#phuse17
e.g.
@isatools
, FMA, GO,
ebi.ac.uk/ols/index
bioportal.bioontology.org
Oct 09, 2017 · 10:29 AM
8
8
Kerstin Forsberg
@kerfors
Excellent to see
@OBOFoundry
on the list of organisations of "Industry Standards - What Else Exists Beside CDISC" at
#phuse17
Oct 09, 2017 · 10:13 AM
0
1
Kerstin Forsberg
@kerfors
A friendly introduction to Deep Learning and Neural Networks
youtube.com/watch?v=BR9h47…
Oct 08, 2017 · 02:30 PM
0
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Kerstin Forsberg
@kerfors
Webinar: FHIR RDF as a Bridge to the Semantic Web in Healthcare, Harold Solbrig, Mayo Clinic, Oct. 12
yosemiteproject.org/recorded-webin…
Oct 05, 2017 · 06:15 PM
2
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Kerstin Forsberg
@kerfors
Looking forward to
#PhUSE17
Europe conference 8-11 October.
storify.com/kerfors/phuse-…
Oct 05, 2017 · 05:28 PM
0
0
Kerstin Forsberg
@kerfors
Meetup with Machine Learning and Data Science (GBG)!
meetu.ps/3dJ8WS
Oct 04, 2017 · 06:56 PM
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1